Extended Sequence Alignment Method for Protein Secondary Structure Prediction
نویسنده
چکیده
Sequence alignment methods are very e ective for secondary structure prediction. However, they are only applicable when the similarity of the sequences is high enough. We previously reported that the extended sequence alignment method, which uses not only amino acid letters but also strings of amino acid letters representing motifs as comparing units, enabled us to nd common motifs even among the sequences whose similarities are low [1]. In this paper, we show that the method also enables us to nd common secondary structure between the sequences, and applicable for secondary structure prediction.
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